Pathology Informatics Summit 2016 Schedule

May 23 - 26, 2016:  Wyndham Hotel, Pittsburgh, PA
 
Pre-conference Meeting Opportunity
  • Rooms available by arrangement on Sunday afternoon and evening for work by standards groups and other initiative desiring hosting by conferencer participants.
  • Since many key informaticists are present at the meeting, this is a great opportunity for groups to avail themselves of free space and collocation at the Summit

 

 3rd WSI Working Group Meeting (OPEN MEETING) 

King's Garden 3

TimeTopicPresenter
1:30 - 5:00 pm

3rd WSI Working Group OPEN MEETING

Phantom Slides and Feature/Reproducibility

Studies with Pathologists

Link to Agenda and Link to WebEx

 Chair: Brandon D Gallas

 

Monday, May 23

Workshop A
8:00 - 12:00 pm  
 
Grand Ballroom 1

Workshop Coordinators: API Training and Education Chairs
David McClintock and Veronica Klepeis
 
TimeTopicPresenter
8:00 - 8:20 am Introduction to the Day VIDEO    PPT David McClintock
8:20 - 9:10 am
LIS Design and Functionality VIDEO    PPT Walter Henricks

9:10 - 10:00 am

A Holistic View of LIS Managment: Resources, Vendors, and Projects                                                  VIDEO   PPT
 Kathy Davis
10:00 - 10:20 am
Break
10:20 - 11:10 am
Patient Identification - Biometric or Botched?
                                                                                   PPT
 Raymond Aller
11:10 - 12:00 pmMolecular Pathology Informatics                  VIDEO    PPT Alexis Carter
12:00 - 1:00 pmLunch 


Workshop B
1:00 - 5:00 pm 
 
Grand Ballroom 1
 
1:00 - 1:50 pm
Data Quality/Information Quality VIDEO    PPT Veronica Klepeis
1:50 - 2:40 pm
Selection and Implementation of a Digital Pathology System                                                          VIDEO    PPT Toby Cornish
2:40 - 3:00 pm
 Break
3:00 - 3:50 pm
Integration vs. Interoperability - Best of Breed vs. Enterprise Solutions                                                      PPT

 David McClintock
 John Blau

3:50 - 4:40 pmBig Data and Computational Pathology – The Future of Pathology Informatics                                   VIDEO    PPT Bruce Levy
4:40 - 5:00 pmWrap Up                                                        VIDEO Veronica Klepeis



Monday, May 23, 2016
8:00 am - 5:00 pm

Workshop Coordinator:  Metin Gurcan, HIMA, International
 
Kings Garden 2/3
8:00 - 8:05 amIntroduction and Welcome                           VIDEO    PPT Metin Gurcan
8:05 - 8:55 amAdventures in Digital Histopathology Image Analysis in London, Canada                                           VIDEO    PPT Aaron Ward
8:55 - 9:50 am HistomicsTK - Developing an Open-Source Platform for Integrated Histopathology Analysis              VIDEO    PPT Lee Cooper
9:50 - 10:10 am
 Break
10:10 - 11:05 am
The importance of standardization of histology preparation in WSI based image analysis    VIDEO    PPTYukako Yagi
11:05 - 12:00 pmSeeing the invisible: new techniques for visualization and predictive modeling in digital pathology VIDEO  PPTGustavo K Rohde
12:00 - 1:00 pmLuncheon Break 
1:00 - 1:55 pmDeep learning for tissue diagnostics and outcome prediction in cancer                                                  PPTJohan Lundin
1:55 - 2:50 pm
Nanoscale pathological imaging for quantitative cancer diagnosis and early prediction of cancer progression
                                                                    VIDEO    PPT
Yang Liu
2:50 - 3:10 pm Break
3:10 - 4:05 pmThe next generation of digital pathology in Linköping, experiences from changes of workflow, systems and diagnostic adaptation                                  VIDEO    PDFAnna Bodén
4:05 - 5:00 pmPanel Discussion                                          VIDEOMetin Gurcan


DPA Companion Session
Session Title:  HOT TOPICS IN DIGITAL PATHOLOGY

Monday, May 23 | 5:30 - 7:30 pm

Moderator: Anil Parwani, MD, PhD, MBA
5:30 - 6:00 pm
Standardized methods for validation of WSI for regulatory submissions  - No CME Provided VIDEO    PPT Michael Montalto
6:00 - 6:30 pm Ex Vivo Microscopy (EVM) and 21st Century Surgical Pathology                                                     VIDEO    PPT Jeffrey Fine
6:30 - 7:00 pm Implementing digital pathology at a large academic medical center: the nuts and bolts               VIDEO    PPT Liron Pantanowitz
7:00 - 7:30 pm New technologies for quantitative analysis of cellular morphology from histopathology images     VIDEO    PPT Gustavo K Rohde

Monday Night Dinner on Your Own

 

Tuesday, May 24
Morning Short Abstract Presentations

Kings Garden 1,  2/3, Grand Ballroom 1; running concurrently

8:00 - 9:00 am

Short Abstract Lectures

 

Short Abstract Lectures

VIDEO

Short Abstract Lectures

VIDEO

 

Grand Ballrooom 1

Presenter

Title

Category

8:00 AM

Jeremy D. Molligan

Development of A Digital Pathology Database for Annotation and Quality Management of a BrainTumor Biorepository                            PPT

Advanced Pathology Informatics

8:15 AM

Keren Hulkower

Standardization of Electronic Templates for Cancer and Biomarker Reporting
                                                                PPT

Advanced Pathology Informatics

8:30 AM

Roy E Lee

Selection of a Laboratory Information System for the Molecular Pathology Laboratory: Unique Aspects and Key Decision Factors

Advanced Pathology Informatics

8:45 AM

Edward E. Stites

Computational Models of Oncogenic Networks: A Potential Tool for Computational Pathology

Advanced Pathology Informatics Computational Pathology

King's Garden 1

8:00 AM

 

Amrom E Obstfeld

 

Comparison of Applied Machine Learning Tools for the Prediction Of Myelodysplastic Syndromes Using Complete Blood Count Parameters

 

Computational Pathology

8:15 AM

Luong Nguyen

Computational pathology framework for segmenting and identifying clinically relevant regions of interest in whole slide images of breast tissue

Computational Pathology

8:30 AM

Akif Burak Tosun

Extracting Diagnostically Relevant Features from H&E Stained Lung Tissue Images

Computational Pathology

King's Garden 2/3

8:00 AM

 

Thomas Durant

 

Morphologic Profiling of Erythrocytes Using Deep Convolutional Neural Networks

 

Advanced Pathology Informatics Computational Pathology Imaging Informatics

8:15 AM

Vincenzo L'Imperio

The putative role of MALDI-MSI in the study of Membranous Glomerulonephritis              PPT

Advanced Pathology Informatics Imaging Informatics

8:30 AM

Joseph Rudolf

Benchmarking Utilization with Population Prevalence Data: A Novel Use of National Census Data                                                   PPT

Advanced Pathology Informatics Computational Pathology

8:45 AM

Ernest Chan

Enhancing Lupus Anticoagulant Reporting Workflow using Python                        PPT

Applied Pathology Informatics

 

 

 

Morning Track Presentations
 

Research Informatics
Track 1

Kings Garden 2/3

Applied Anatomical and Clinical Informatics
Track 2

Grand Ballroom 1

Selected Platform Lectures
 Track 3

Kings Garden 1

9:00 - 9:35 am

A Data Revolution is Coming - Revitalizing our AP data through Natural Language Processing and Federated Data Sharing


Michael Feldman and Rebecca Jacobson

VIDEO      PPT

Validating a Whole Slide Imaging System - A Case Based Approach to the CAP Guidelines

 

 

Brent Tan

VIDEO    PPT

Implementation of Discrete Data-Synoptic Reporting for Cancer Pathology Reports in a High Volume, Subspecialty-based Pathology Practice

 

Walter Henricks


9:35 - 9:45 am 10 Minute Break to Switch Lectures
9:45 - 10:20 am

Precision Pathology: Big Data in BioBanking

 

 

Michael Roehrl 

not available

The Dangers of Improperly Configured Linear Barcode Systems and What To Do About It


Alexis Carter

VIDEO    PPT

An Integrated Pathology Workflow Solution for Biobank Research Consortia

 

Lika Svanadze

VIDEO    PPT

10:20 - 11:20 am Break, Browse Exhibits, and Poster Sessions
11:20 - 12:00

Applying 3-D printing to Pathology Practice


Liron Pantanowitz

Navid Farahani

VIDEO    PPT

Supporting Laboratory Outreach with Informatics

 


Mark Tuthill

VIDEO    PPT

 Image Analysis for Routine Workflow

 

Christopher Williams

VIDEO    PPT

12:00 - 1:00 pm Lunch Break

 

 

Tuesday Plenary Presentations

 Radiology Pathology Convergence
 Grand Ballroom 1
 
1:00 - 1:05 pmOpening Welcome to PI Summit                         Mark Tuthill
1:05 - 1:35 pmIntegrated Diagnostics: Optimizing Test Ordering and Result Reporting in Diagnostic Medicine                       VIDEO    PPT

Bruce Friedman
1:35 - 2:05 pmThe (Unforseen) Challenges and Benefits of Integrating Diagnostic Workflows                                         VIDEO    PPT W. Dean Wallace
2:05 - 2:35 pmFederation and use of Advanced NLP Techniques:
A Pathway to Realizing Cross-domain Information Models and Data Presentation Layers between Radiology and Pathology                                                          
VIDEO    PPT
Ul Balis
2:35 - 3:05 pmPathomics meets Radiomics                               VIDEO    PPTJoel Saltz
3:05 - 3:35 pm
Radiology to Pathology: 
Closed Loop Evaluation for Image Analysis                     PPT
Metin Gurcan
3:35 - 4:00 pm Break 

 

 
 Afternoon Track Presentations
 

Focus on Pathology and Clinical Informatics Education and Training

Grand Ballroom 1

4:00 - 5:30 pm

Clinical Informatics Fellowships – From Conception to Actualization                                 PPT

American Board of Pathology Maintenance of Certification Update                                           PPT

Pathology Informatics Education Resource for Resident Education (PIER)                            PPT

Bruce Levy

 

Rebecca Johnson

Walter Henricks

5:30 - 7:00 pm

Reception

 

  Tuesday Evening Workgroup

7:15 pm - 8:00 pm

Brigade Room

Laboratory Information Systems for Low and Middle Income Countries (LMIC)   Moderators: Raymond Aller and John Flanigan 

 

 

Wednesday, May 25

Morning Short Abstract Sessions
Kings Garden 1,  2/3, Grand Ballroom 1; running concurrently
 
8:00 - 9:00 am
Short Abstract Lectures
Short Abstract Lectures
Short Abstract Lectures

Grand Ballrooom 1

Presenter

Title

Category

8:00 AM

Izak B. Dimenstein

Laboratory website portals as pathology educational resources. The concept of combining apples and oranges with other fruits                                 PPT

Advanced Pathology Informatics Computational Pathology Imaging Informatics

8:15 AM

Valerie Arboleda

Straddling the Clinical and Anatomic Pathology Divide, The UCLA Molecular Diagnostic Laboratory’s experience transitioning to the AP and CP Epic 2014 Beaker Module.                                             PPT

Applied Pathology Informatics

8:30 AM

Walter Henricks

Implementation of User-Tailored Data Analytics in a Complex Laboratory Setting

Applied Pathology Informatics

8:45 AM

Navid Farahani

Comparison of LOINC Codes for Commonly Ordered Lab Tests Provided by Different Medical Centers

Applied Pathology Informatics

King's Garden 1

8:00 AM

Alex Dussaq

HCV Genie V 2.0: A Web Platform for the Versant Hepatitis C Virus (HCV) Genotype Line Probe Assay
                                                                    PPT

Imaging Informatics

8:15 AM

Chirayu Goswami

Clinical Lab Manager System V1.0 – A web-based application to manage all workflow in genomic pathology laboratories with interactivity with Beaker and I2B2.

Imaging Informatics

8:30 AM

Keluo Yao

Fetal Autopsy Report Automation with Microsoft Excel and Word                                                      PPT

Imaging Informatics

8:45 AM

Chris Williams

A Brief Technical Note on Microservices Architecture

Imaging Informatics

King's Garden 2/3

8:00 AM

Xiujun Fu

Evaluation of 3D reconstruction analysis of FISH slides scanned by a confocal WSI scanner
                                                                    PPT

Applied Pathology Informatics

8:15 AM

Yanhui Liang

Three-Dimension (3D) Whole-slide Histological Image Analytics                                             PPT

Applied Pathology Informatics

8:30 AM

Douglas J Hartman

Lessons Learned from Integration of Digital Pathology into Gastrointestinal Pathology        PPT

Applied Pathology Informatics

8:45 AM

Shikhar Uttam

Multi-dimensional nanoscale nuclear architecture mapping (md-nanoNAM) for prospective prediction of cancer progression in inflammatory bowel disease (IBD) colitis patients                                       PPT

Applied Pathology Informatics

 

 

Morning Round Table Sessions

Kings Terrace 

Roundtables will be held in King's Garden Terrace with participation based on first come first served seating. There is an overall maximum limit of 50 participants, at 5 tables of ten. For each session, the participants will be afforded direct interaction with three of the five faculty members present for a rich personal interaction. There will be three table rotations for each session allowing for 25-35 minutes of discussion at each table.

9:00 - 10:20 am

Pathology Informatics Mentoring Round Table

Moderator: Rebecca Jacobson

This session is designed for pathology informatics fellows, interested residents, junior faculty and travel awardees allowing them to interact with informaticists to discuss the role of mentoring and how to be mentored. Being a mentor and being mentored require active participation on the part of both parties in order for the experience to be successful. This session will help establish ground rules and effective behavioral characteristics for the participants to get the most of mentoring.   

                                                      

10:20 - Noon

Problem Solving in Pathology Informatics               

Moderators: Mark Tuthill and Michael Feldman

This is session will allow the participant to get answers to questions and challenges they experience in their workplace environment, discuss best practices, approaches to problems and gain insight and experience from others who have faced similar challenges. Topic areas will address: Digital Pathology, LIS Operations and Implementation, Point of Care Informatics, Molecular Pathology, Laboratory Outreach as well as other open ended questions that individual faculty may be able to address.



Morning Track Presentations

 

Research Informatics
Track 1

Kings Garden 2/3

Applied Informatics
Track 2

Grand Ballroom 1

Selected Platform Lectures
Track 3

Kings Garden 1

9:00 - 9:35 am

From Pixels to Diagnosis: Whole Slide Imaging and Beyond

Anil Parwani


Supporting Point of Care Testing and Informatics

   
David McClintock

VIDEO    PPT

Composable, Petabyte-Scale Genomics Workflows with Docker and Luigi

 Wade Schulz

VIDEO    PPT

9:35 - 9:45 am 10 Minute Break to Switch Lectures
9:45 - 10:20 am

Clinical Decision Support in the Era of Genome Informed Cancer Medicine

 

Mia Levy

VIDEO    PPT

How Automation, Informatics, and process Improvement Enabled the Achievement of Six-Sigma Quality in a Clinical Laboratory

Charles D. Hawker

VIDEO    PPT

Assessing the impact of computerized provider order entry on laboratory test cancellations in a multi-site health system

Patrick Mathias

VIDEO    PPT

10:20 - 11:20 am
Break, Browse Exhibits, and Poster Sessions
11:20 - Noon

Exemplars in Computational Pathology

 

 

 

Ulysses Balis

VIDEO    PPT

Using Structured Data in Real Time to Improve Clinical Practice & Public Health: The California Cancer Registry Pathway to 2020


Mary Edgerton

Jeremy Pine

VIDEO    PPT

A systematic analysis of discordant diagnoses in digital pathology compared to light microscopy

  

 

Bethany Williams

VIDEO    PPT

12:00 - 1:30 pm Lunch Break and Browse Exhibits

 

 

Diamond Level Sponsor Presentation

Sunquest Information Systems

12:30 pm - 1:30pm

Grand Ballroom 1

 

   10 Ways Sunquest is Automating and Innovating the Pathology Workflow

    Moderators: Chad Meyers and Janice Caputo

    VIDEO

 

 

Wednesday Plenary Presentations
Regulatory Issues Impacting the Laboratory and Pathology Informatics

 
Grand Ballroom 1

1:30 - 2:10 pmKeynote Lecture: The Power of Engagement     VIDEO    PPT Jill Hagenkord
2:10 - 2:50 pm Regulatory Issues                                                VIDEO    PPT  Walter Henricks
2:50 - 3:30 pm Town Hall                                                            VIDEO Moderator: Bob McGonnagle
3:30 - 4:30 pm Break, Browse Exhibits, and Poster Sessions
4:30 -  5:30 pm
API Block: Presidential Address, Membership Solicitation, and Discussion about Journal of Pathology Informatics by Mike Riben and API Officers, Liron Pantanowitz, and Anil Parwani
 
VIDEO    PPT
Conference Adjournment for Wednesday
Dinner on Your Own
 


 


Informatics and Precision Medicine

Thursday Plenary Presentations
 
Grand Ballroom 1

Time Topic Presenter
9:00 - 9:40 am UCLA Perspective on Precision Medicine           VIDEO    PPT Jonathan Braun
9:40 - 10:20 am
Precision Medicine Diagnostics in a Healthcare System,In-House or Outsource?: A Pathologists Perspective
                                                                           VIDEO    PPT
Dhananjay Chitale
10:20 - 11:00 am
Big Data and Computational Pathology in Analytics
                                                                           VIDEO    PPT
Michael Becich
11:00 - 11:05 am Stand up break
11:05 - 11:45 am Tying It All Together - The Field Going Forward VIDEO    PPT John Gilbertson
11:45 am - 12:15 pm Wrap-up Discussion and Summary                     VIDEO
Faculty Panel

 

 

 

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